CDS
| Accession Number | TCMCG024C53004 |
| gbkey | CDS |
| Protein Id | XP_022035330.1 |
| Location | join(167066426..167066437,167066548..167066664,167066748..167066806,167067886..167067945,167068030..167068083,167068812..167068860,167068997..167069044,167069125..167069190,167069959..167070009,167070136..167070255,167070344..167070428,167070537..167070618,167070719..167070833,167070934..167070990,167071096..167071142,167071219..167071273,167071508..167071654) |
| Gene | LOC110937242 |
| GeneID | 110937242 |
| Organism | Helianthus annuus |
Protein
| Length | 407aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA396063 |
| db_source | XM_022179638.2 |
| Definition | flap endonuclease 1 isoform X1 [Helianthus annuus] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGGGATAAAGGGTTTAACGAAGCTTTTAGCGGATAATGCACCGAAGGCTATGAAAGAGCAAAAATTTGAAAGTTATTTTGGTCGGAAAATTGCTATCGATGCTAGCATGAGCATCTACCAGTTTCTGATTGTTGTGGGACGAAGTGGGACTGAAATGTTGACCAATGAGGCCGGTGAAGTGACCAGTCATTTGCAAGGGATGTTCAATCGGACGATAAGGCTTTTGGAGTCTGGATTGAAGCCAGTCTATGTTTTTGATGGAGCACCTCCAGATCTGAAGAAACAAGAGCTTGCAAAACGTTACTCAAGGAGAGAAGACGCAACAGCTGGCTTAGATGAGGCTATAAAGTCTGGCAATAAGGAAGATATCGAGAAATTTAGTAAACGTACAGTGAAGGTGACTAAACAACATAACGAGGATTGCAAAAAACTTCTCAGGCTTATGGGAGTGCCTGTCATTGAGGCTCCATCTGAAGCAGAGGCACAGTGTGCTGCTCTTTGCAAAGCTGATAAGGTCTATGCTGTTGCATCCGAAGATATGGATTCTCTTACTTTTGGAGCACCCAAATTTCTTCGTCATTTAATGGACCCGAGCTCAAGAAAGACCCCCGTGATGGAGTTTGATGTTTCAAAGGTTTTGGAGGAACTTAACCTGACAATGGATCAATTCATTGATTTGTGCATTCTATGTGGGTGTGATTATTGTGACAGCATTAAAGGTATCGGTGGTCAGACAGCTTTGAAGCTTATCCGTCAACATGGTTCAATAGAGAGTATTCTGGAGAATATAAACAGAGACAGATATCAGATACCTGAAGATTGGCCATATCAGGAGGCTCGACGGCTTTTCAAAGAACCTTTGGTCTGTGACGATGATGAGAAGCTTGAACTTAAATGGACCGCTCCAGATGAAGAAGGCCTGTTAAACTTCTTGGTGACTGAAAATGGATTCAACAGCGACCGAGTCACAAAGGCGGTAGAGAAAATAAAAGCTTCCAAGAACAAGTCTACACAGAACCGATTAGAATCATTCTTCAAACCCGTTGCTAGCACGTCTGTACCCATTAAAAGAAAGGGAACGAAATGCATTCTTGGATCTCCAAAACAAGTAATCAAGATTAAGAAATTTCCTCAAGCATCCTGCTTTAGTCCTCCTCCAGTTGTAGGTGTGCATTTCAGGCACCCATTGATGTTATCGAAAGGTGTCTGCTTTGGAGCATGA |
| Protein: MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLESGLKPVYVFDGAPPDLKKQELAKRYSRREDATAGLDEAIKSGNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKADKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKTPVMEFDVSKVLEELNLTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENINRDRYQIPEDWPYQEARRLFKEPLVCDDDEKLELKWTAPDEEGLLNFLVTENGFNSDRVTKAVEKIKASKNKSTQNRLESFFKPVASTSVPIKRKGTKCILGSPKQVIKIKKFPQASCFSPPPVVGVHFRHPLMLSKGVCFGA |